MaLab 上海交通大学
English中文

精选论文

共 20 篇论文
  1. 2026

    通过 RNA 锚定的多组学反卷积解析空间细胞组织结构

    Bai, Y., Guan, X., Xiong, S., Guo, X., Wang, X., Yi, S., Ju, W., Ma, S., Dong, Q. and Liu, W.

    完整引文（英文原文）

    Bai, Y., Guan, X., Xiong, S., Guo, X., Wang, X., Yi, S., Ju, W., Ma, S., Dong, Q. and Liu, W. (2026). Deciphering spatial cellular organization through RNA-anchored multi-omics deconvolution.

  2. 2026

    MARV：基于多变量指数族的罕见变异关联分析 SKAT 与 Burden 检验

    Niu, T., Yu, K., Luo, S.* and Ma, S.*

    完整引文（英文原文）

    Niu, T., Yu, K., Luo, S.* and Ma, S.* (2026). MARV: MultivAriate exponential family-based SKAT and Burden tests for Rare Variant association analysis. *Co-corresponding author.

  3. 2026

    利用大规模常规临床数据开展 AI 辅助的脑小血管病机会性筛查

    Wang, Y., Huang, D., Ma, S., Cui, Y., Yuan, X., Gao, R., Sun, X., Xia, Y., Zhang, Y., Li, P. and Yu, Z.

    完整引文（英文原文）

    Wang, Y., Huang, D., Ma, S., Cui, Y., Yuan, X., Gao, R., Sun, X., Xia, Y., Zhang, Y., Li, P. and Yu, Z. (2026). AI-enabled opportunistic screening of cerebral small vessel disease using large-scale routine clinical data.

  4. 2026

    KnockoffPipeline：基于 Knockoff 的全基因组关联分析统一 R 工作流程

    Shen, Y., Wang, T.* and Ma, S.*

    完整引文（英文原文）

    Shen, Y., Wang, T.* and Ma, S.* (2026). KnockoffPipeline: A Unified R Workflow for Knockoff-Based Genome-Wide Association Analysis. *Corresponding author.

  5. 2026

    Cox-MK：用于全基因组生存关联分析的 model-X knockoff 方法

    Hu, L., Yang, C., Tang, Z., Yan, J., Cheng, H., Bao, L., Ji, J.*, Ma, S.* and Zhang, T.*

    Genetics

    完整引文（英文原文）

    Hu, L., Yang, C., Tang, Z., Yan, J., Cheng, H., Bao, L., Ji, J.*, Ma, S.* and Zhang, T.* (2026). Cox-MK: a model-X knockoff method for genome-wide survival association analysis. Genetics, 233, iyag123. *Co-corresponding author.

  6. 2026

    SpaNiche：通过空间生态位分析探索空间转录组数据中的共定位模式与细胞相互作用

    Huang, S., Ran, Q., Wang, X., Tang, J., Xi, J., Ma, S.* and Xi, R.*

    Genome Biology

    完整引文（英文原文）

    Huang, S., Ran, Q., Wang, X., Tang, J., Xi, J., Ma, S.* and Xi, R.* (2026). SpaNiche: spatial niche analysis to explore colocalization patterns and cellular interactions in spatial transcriptomics data. Genome Biology, 27, 182. *Co-corresponding author.

  7. 2026

    利用联邦因果学习模型实现基层医疗安全数据共享：方法介绍

    Chen, M., Chang, Z., Gong, P., Tang, Z., Hu, L., Zhang, X., Ma, S., Liao, J., Jiang, X., Li, J., and Zhang, T.

    BMJ Health & Care Informatics

    完整引文（英文原文）

    Chen, M., Chang, Z., Gong, P., Tang, Z., Hu, L., Zhang, X., Ma, S., Liao, J., Jiang, X., Li, J., and Zhang, T. (2026). Introduction to secure data sharing in primary care using the federated causal learning models. BMJ Health & Care Informatics 33, e101543.

  8. 2026

    SurvSTAAR：大规模全基因组测序研究中事件发生时间性状罕见变异分析的强效统计框架

    Cui, Y.#, Ma, S.#, Yuan, Y., Zhu, N., Chen, H., Wei, T., Li, Z., Li, X. and Yu, Z.

    Journal of the American Statistical Association

    完整引文（英文原文）

    Cui, Y.#, Ma, S.#, Yuan, Y., Zhu, N., Chen, H., Wei, T., Li, Z., Li, X. and Yu, Z. (2026) SurvSTAAR: A powerful statistical framework for rare variant analysis of time-to-event traits in large-scale whole-genome sequencing studies. Journal of the American Statistical Association, 121, 905–916. #Co-first author.

  9. 2024

    利用 Knockoff 估计局部遗传相关性，减少跨性状择偶带来的混杂

    Ma, S., Wang, F., Border, R., Buxbaum, J., Zaitlen, N. and Ionita-Laza, I.

    The American Journal of Human Genetics

    完整引文（英文原文）

    Ma, S., Wang, F., Border, R., Buxbaum, J., Zaitlen, N. and Ionita-Laza, I. (2024) Local genetic correlation via knockoffs reduces confounding due to cross-trait assortative mating. The American Journal of Human Genetics, 111, 2839-2848.

  10. 2024

    纵向数据的高维中介分析

    Cui, Y., Lin, Q., Zhou, J., Yuan, X., Ma, S.* and Yu, Z.*

    Briefings in Bioinformatics

    完整引文（英文原文）

    Cui, Y., Lin, Q., Zhou, J., Yuan, X., Ma, S.* and Yu, Z.* (2024) High-dimensional mediation analysis for longitudinal data. Briefings in Bioinformatics, 25, bbae496. *Co-corresponding author.

  11. 2024

    空气污染物暴露与脑小血管病的关联：PRS 定义的遗传易感性的修饰作用

    Sun, X.#, Ma, S.#, Guo, Y.,#, Chen, C., Pan, L., Cui, Y., Chen, Z., Dijkhuizen, R. M., Zhou, Y., Boltze, J., Yu, Z. and Li, P.

    Ecotoxicology and Environmental Safety

    完整引文（英文原文）

    Sun, X.#, Ma, S.#, Guo, Y.,#, Chen, C., Pan, L., Cui, Y., Chen, Z., Dijkhuizen, R. M., Zhou, Y., Boltze, J., Yu, Z. and Li, P. (2024) The association between air pollutant exposure and cerebral small vessel disease with modifying effects of PRS-defined genetic susceptibility. Ecotoxicology and Environmental Safety, 281, 116638. #Co-first author.

  12. 2024

    HEARTSVG：大规模空间转录组数据中快速、准确识别空间变异基因的方法

    Yuan, X., Ma, Y., Gao, R., Cui, S., Wang, Y., Fa, B., Ma, S., Wei, T., Ma, S. and Yu, Z.

    Nature Communications

    完整引文（英文原文）

    Yuan, X., Ma, Y., Gao, R., Cui, S., Wang, Y., Fa, B., Ma, S., Wei, T., Ma, S. and Yu, Z. (2024) HEARTSVG: a fast and accurate method for spatially variable gene identification in large-scale spatial transcriptomic data. Nature Communications, 15, 5700.

  13. 2023

    随机临床试验中的最优前后分配

    Ma, S. and Wang, T.

    BMC Medical Research Methodology

    完整引文（英文原文）

    Ma, S. and Wang, T. (2023). The optimal pre-post allocation for randomized clinical trials. BMC Medical Research Methodology, 23, 72.

  14. 2023

    BIGKnock：通过生物样本库规模数据的 Knockoff 分析精细定位基因水平关联

    Ma, S., Wang, C., Khan, A., Liu, L., Dalgleish, J., Kiryluk, K., He, Z. and Ionita-Laza, I.

    Genome Biology

    完整引文（英文原文）

    Ma, S., Wang, C., Khan, A., Liu, L., Dalgleish, J., Kiryluk, K., He, Z. and Ionita-Laza, I. (2023). BIGKnock: fine-mapping gene-based associations via knockoff analysis of biobank-scale data. Genome Biology, 24, 24.

  15. 2022

    GhostKnockoff 推断助力全基因组关联研究识别潜在因果变异

    He, Z., Liu, L., Belloy, M. E., Guen, Y. L., Sossin, A., Liu. X., Qi. X, Ma, S., Gyawali, P. K., Wyss-Coray, T., Tang, H., Sabatti, C., Candès, E., Greicius, M. D. and Ionita-Laza, I.

    Nature Communications

    完整引文（英文原文）

    He, Z., Liu, L., Belloy, M. E., Guen, Y. L., Sossin, A., Liu. X., Qi. X, Ma, S., Gyawali, P. K., Wyss-Coray, T., Tang, H., Sabatti, C., Candès, E., Greicius, M. D. and Ionita-Laza, I. (2022) GhostKnockoff inference empowers identification of putative causal variants in genome-wide association studies. Nature Communications, 13, 7209.

  16. 2021

    整合长程染色质相互作用与 Knockoff 基因型，提升基因水平检验效能

    Ma, S., Dalgleish, J., Lee, J., Wang, C., Liu, L., Gill, R., Buxbaum, J. D., Chung, W. K., Aschard, H., Silverman, E. K., Cho, M. H., He, Z. and Ionita-Laza, I.

    Proceedings of the National Academy of Sciences of the United States of America

    完整引文（英文原文）

    Ma, S., Dalgleish, J., Lee, J., Wang, C., Liu, L., Gill, R., Buxbaum, J. D., Chung, W. K., Aschard, H., Silverman, E. K., Cho, M. H., He, Z. and Ionita-Laza, I. (2021). Powerful gene-based testing by integrating long-range chromatin interactions and knockoff genotypes. Proceedings of the National Academy of Sciences of the United States of America (direct submission), 118, e2105191118.

  17. 2021

    利用多个 Knockoff 在生物样本库规模开展常见及罕见变异的全基因组分析，并应用于阿尔茨海默病遗传学

    He, Z., Guen, Y. L., Liu, L., Lee, J., Ma, S., Yang, A. C., Liu. X., Rutledge, J., Losada, P. M., Song, B., Belloy, M. E., Butler, R. R., Longo, F. M., Tang, H., Mormino, E. C., Wyss-Coray, T., Greicius, M. D. and Ionita-Laza, I.

    The American Journal of Human Genetics

    完整引文（英文原文）

    He, Z., Guen, Y. L., Liu, L., Lee, J., Ma, S., Yang, A. C., Liu. X., Rutledge, J., Losada, P. M., Song, B., Belloy, M. E., Butler, R. R., Longo, F. M., Tang, H., Mormino, E. C., Wyss-Coray, T., Greicius, M. D. and Ionita-Laza, I. (2021) Genome-wide analysis of common and rare variants via multiple knockoffs at biobank scale, with an application to Alzheimer disease genetics. The American Journal of Human Genetics, 108, 2336-2353.

  18. 2021

    “If the glove fits”：全院普遍佩戴手套与手卫生改善有关，并可能减少艰难梭菌感染

    Prasad, P., Brown, L., Ma, S., McDavid, A., Rudmann, A., Lent, D., Reagan-Webster, P., Valcin, K. E., Graman, P. and Apostolakos, M.

    Infection Control and Hospital Epidemiology

    完整引文（英文原文）

    Prasad, P., Brown, L., Ma, S., McDavid, A., Rudmann, A., Lent, D., Reagan-Webster, P., Valcin, K. E., Graman, P. and Apostolakos, M. (2021) “If the glove fits”: Hospital-wide universal gloving is associated with improved hand hygiene and may reduce Clostridioides difficile infection. Infection Control and Hospital Epidemiology,, 42, 1351-1355.

  19. 2020

    剂量–反应研究中的广义多重对比检验

    Ma, S.* and McDermott, M. P.

    Statistics in Medicine

    完整引文（英文原文）

    Ma, S.* and McDermott, M. P. (2020). Generalized multiple contrast tests in dose-response studies. Statistics in Medicine, 39, 757-772. *Corresponding author.

  20. 2017

    早期亨廷顿病（HD）中运动、认知和功能下降共同构成一个进展因子

    Schobel, S. A., Palermo, G., Auinger, P., Long, J. D., Ma, S., Khwaja, O. S., Trundell, D., Cudkowicz, M., Hersch, S., Sampaio, C., Dorsey, E. R., Leavitt, B. R., Kieburtz, K. D., Sevigny, J. J., Langbehn, D. R., Tabrizi, S. J.; TRACK-HD, COHORT, CARE-HD, and 2CARE Huntington Study Group Investigators.

    Neurology

    完整引文（英文原文）

    Schobel, S. A., Palermo, G., Auinger, P., Long, J. D., Ma, S., Khwaja, O. S., Trundell, D., Cudkowicz, M., Hersch, S., Sampaio, C., Dorsey, E. R., Leavitt, B. R., Kieburtz, K. D., Sevigny, J. J., Langbehn, D. R., Tabrizi, S. J.; TRACK-HD, COHORT, CARE-HD, and 2CARE Huntington Study Group Investigators. (2017) Motor, cognitive, and functional declines contribute to a single progressive factor in early HD. Neurology, 89, 2495-2502.